Friday 11 November 2011

Phenotype Ontology search resources

I just spent a while looking for these so I thought I'd share my findings.

This is a list of website URI's associated with ontologies, mouse/mammalian phenotype ontology term ids specifically. Where I couldn't find a specific website that shows the details of the ontology, I used the EBI's general ontology lookup search.

For each of the term types, replace the %s with a full term id like MP:0010053. You can use the sprintf() function to do this :-).

MP:
http://www.informatics.jax.org/searches/Phat.cgi?id=%s
BSPO:
http://www.ebi.ac.uk/ontology-lookup/?termId=%s
CHEBI:
http://www.ebi.ac.uk/chebi/searchId.do?chebiId=%s
CL:
http://www.ebi.ac.uk/ontology-lookup/?termId=%s
ENVO:
http://www.ebi.ac.uk/ontology-lookup/?termId=%s
GO:
http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=%s
IMR:
http://www.ebi.ac.uk/ontology-lookup/?termId=%s
MA:
http://www.informatics.jax.org/searches/AMA.cgi?id=%s
PATO:
http://www.ebi.ac.uk/ontology-lookup/?termId=%s

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