Pretty much everything you need to know about Amino Acids is layed out on this wiki page from where I also got the pictures: http://en.wikipedia.org/wiki/List_of_standard_amino_acids
Knowing the Amino Acids and their codes is to biologists what knowing the Periodic Table is to chemists but far more important ;p.
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And to start the program just run the executable JAR (AALA.jar) in the dist folder. Download it here:
http://www.electronicocean.com/bioinformatics/aminoacids.zip
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